{
  "_id": "6a1b033a1d7bb097a0a0145c",
  "Package": "neuroimaGene",
  "Type": "Package",
  "Title": "Transcriptomic Atlas of Neuroimaging Derived Phenotypes",
  "Version": "0.1.4",
  "Authors@R": "c(person(\"Xavier\", \"Bledsoe\", \nemail = \"xbledsoe22@gmail.com\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6091-9372\")),\nperson(\"Eric\", \"Gamazon\",\nemail = \"egamazon@vumc.org\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0003-4204-8734\")))",
  "Maintainer": "Xavier Bledsoe <xbledsoe22@gmail.com>",
  "Description": "Contains functions to query and visualize the Neuroimaging\nfeatures associated with genetically regulated gene expression\n(GReX). The primary utility, neuroimaGene(), relies on a list\nof user-defined genes and returns a table of neuroimaging\nfeatures (NIDPs) associated with each gene. This resource is\ndesigned to assist in the interpretation of genome-wide and\ntranscriptome-wide association studies that evaluate brain\nrelated traits. Bledsoe (2024)\n<doi:10.1016/j.ajhg.2024.06.002>. In addition there are several\nvisualization functions that generate summary plots and\n2-dimensional visualizations of regional brain measures.\nMowinckel (2020).",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
  "LazyData": "true",
  "RoxygenNote": "7.3.3",
  "VignetteBuilder": "knitr",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-30 10:52:22 UTC",
    "User": "root"
  },
  "Author": "Xavier Bledsoe [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6091-9372>), Eric Gamazon [aut]\n(ORCID: <https://orcid.org/0000-0003-4204-8734>)",
  "Config/pak/sysreqs": "libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev\nlibicu-dev libssl-dev libproj-dev libsqlite3-dev\nlibudunits2-dev",
  "Repository": "https://xbledsoe.r-universe.dev",
  "Date/Publication": "2026-04-29 18:53:12 UTC",
  "RemoteUrl": "https://github.com/cran/neuroimaGene",
  "RemoteRef": "HEAD",
  "RemoteSha": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
  "MD5sum": "3faa568986eaefbb3e2259df2b4979a3",
  "_user": "xbledsoe",
  "_type": "src",
  "_file": "neuroimaGene_0.1.4.tar.gz",
  "_fileid": "976560fac534ce12757d390b68b7ceee0eb6526d310a75b61a18317d1a2f4146",
  "_filesize": 1519937,
  "_sha256": "976560fac534ce12757d390b68b7ceee0eb6526d310a75b61a18317d1a2f4146",
  "_created": "2026-05-30T10:52:22.000Z",
  "_published": "2026-05-30T15:33:14.588Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78643851024,
      "time": 165,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7307685904"
    },
    {
      "job": 78643851033,
      "time": 155,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307685378"
    },
    {
      "job": 78643851028,
      "time": 146,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7309274282"
    },
    {
      "job": 78643851032,
      "time": 171,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7309272836"
    },
    {
      "job": 78642502061,
      "time": 209,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307652885"
    },
    {
      "job": 78643851030,
      "time": 125,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307682567"
    },
    {
      "job": 78643851036,
      "time": 146,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7307688551"
    },
    {
      "job": 78643851044,
      "time": 102,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7307684693"
    },
    {
      "job": 78643851045,
      "time": 114,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7307685612"
    }
  ],
  "_buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/cran/neuroimaGene",
  "_commit": {
    "id": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
    "author": "Xavier Bledsoe <xbledsoe22@gmail.com>",
    "committer": "cran-robot <csardi.gabor+cran@gmail.com>",
    "message": "version 0.1.4\n",
    "time": 1777488792
  },
  "_maintainer": {
    "name": "Xavier Bledsoe",
    "email": "xbledsoe22@gmail.com",
    "login": "xbledsoe",
    "description": "",
    "uuid": 62114350,
    "orcid": "0000-0002-6091-9372"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "stringr",
      "role": "Imports"
    },
    {
      "package": "ggseg",
      "role": "Imports"
    },
    {
      "package": "sf",
      "role": "Imports"
    },
    {
      "package": "RSQLite",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "cran",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-17",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [
    {
      "name": "0.1.3",
      "date": "2026-04-25"
    },
    {
      "name": "0.1.4",
      "date": "2026-04-29"
    }
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "xbledsoe",
      "count": 1,
      "uuid": 62114350
    }
  ],
  "_userbio": {
    "uuid": 62114350,
    "type": "user",
    "name": "Xavier Bledsoe"
  },
  "_downloads": {
    "count": 477,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/neuroimaGene"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/neuroimaGene.html",
    "manual.pdf"
  ],
  "_realowner": "xbledsoe",
  "_cranurl": false,
  "_releases": [
    {
      "version": "0.1.0",
      "date": "2024-07-03"
    },
    {
      "version": "0.1.1",
      "date": "2024-09-20"
    },
    {
      "version": "0.1.2",
      "date": "2024-12-09"
    },
    {
      "version": "0.1.3",
      "date": "2026-04-25"
    },
    {
      "version": "0.1.4",
      "date": "2026-04-29"
    }
  ],
  "_exports": [
    "check_db",
    "listNIDPs",
    "neuro_vis",
    "neuroimaGene",
    "plot_gnNIDP",
    "plot_gns",
    "plot_nidps"
  ],
  "_datasets": [
    {
      "name": "anno",
      "title": "NIDP annotation data",
      "object": "nidp_anno",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "gwas_phenotype",
        "modality",
        "atlas",
        "side",
        "primary",
        "secondary",
        "region",
        "measurement",
        "fMRI_node_1",
        "fMRI_node_2",
        "NIDP"
      ],
      "rows": 3935,
      "table": true,
      "tojson": true
    },
    {
      "name": "fs_anno",
      "title": "NIDP freesurfer annotation data",
      "object": "fs_anno",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "gwas_phenotype",
        "atl",
        "hemisphere",
        "secondary",
        "fs_name",
        "label",
        "atlas"
      ],
      "rows": 890,
      "table": true,
      "tojson": true
    },
    {
      "name": "ng_vignette",
      "title": "NeuroimaGene object for vignette illustration",
      "object": "ng_vignette",
      "class": [
        "data.table",
        "data.frame"
      ],
      "fields": [
        "gene",
        "gene_name",
        "gwas_phenotype",
        "training_model",
        "zscore",
        "mod_BHpval"
      ],
      "rows": 3824,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "anno",
      "title": "NIDP annotation data",
      "topics": [
        "anno"
      ]
    },
    {
      "page": "check_db",
      "title": "Check neuroimaGene database downloaded",
      "topics": [
        "check_db"
      ]
    },
    {
      "page": "fs_anno",
      "title": "NIDP freesurfer annotation data",
      "topics": [
        "fs_anno"
      ]
    },
    {
      "page": "listNIDPs",
      "title": "List NIDPs",
      "topics": [
        "listNIDPs"
      ]
    },
    {
      "page": "neuro_vis",
      "title": "2D visualization plot of a neuroimaGene object",
      "topics": [
        "neuro_vis"
      ]
    },
    {
      "page": "neuroimaGene",
      "title": "Main neuroimaGene query",
      "topics": [
        "neuroimaGene"
      ]
    },
    {
      "page": "ng_vignette",
      "title": "NeuroimaGene object for vignette illustration",
      "topics": [
        "ng_vignette"
      ]
    },
    {
      "page": "plot_gnNIDP",
      "title": "Gene by NIDP summary plot of neuroimaGene object",
      "topics": [
        "plot_gnNIDP"
      ]
    },
    {
      "page": "plot_gns",
      "title": "Gene summary plot of neuroimaGene object",
      "topics": [
        "plot_gns"
      ]
    },
    {
      "page": "plot_nidps",
      "title": "NIDP summary plot of NeuroimaGene object",
      "topics": [
        "plot_nidps"
      ]
    }
  ],
  "_rundeps": [
    "bit",
    "bit64",
    "blob",
    "cachem",
    "class",
    "classInt",
    "cli",
    "cpp11",
    "data.table",
    "DBI",
    "dplyr",
    "e1071",
    "farver",
    "fastmap",
    "generics",
    "ggplot2",
    "ggseg",
    "ggseg.formats",
    "glue",
    "gtable",
    "isoband",
    "KernSmooth",
    "labeling",
    "lifecycle",
    "magrittr",
    "MASS",
    "memoise",
    "pillar",
    "pkgconfig",
    "proxy",
    "purrr",
    "R6",
    "RColorBrewer",
    "Rcpp",
    "rlang",
    "RSQLite",
    "s2",
    "S7",
    "scales",
    "sf",
    "stringi",
    "stringr",
    "tibble",
    "tidyr",
    "tidyselect",
    "units",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "wk"
  ],
  "_vignettes": [
    {
      "source": "neuroimaGene.Rmd",
      "filename": "neuroimaGene.html",
      "title": "neuroimaGene",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "How does it work?",
        "Using the NeuroimaGene R package",
        "The main neuroimaGene query",
        "Short Parameter Descriptions:",
        "NIDP modality and atlas descriptions:",
        "Example NeuroimaGene Query:",
        "Statistical visualizations",
        "Genes",
        "Neuroimaging Derived Phenotypes (NIDPs)",
        "Genes and Neuroimaging Derived Phenotypes (NIDPs)",
        "2-Dimensional brain visualization of GReX-NIDP associations",
        "Limitations",
        "Terminology",
        "Associated papers for further reading"
      ],
      "created": "2024-07-04 02:45:17",
      "modified": "2026-04-29 18:53:12",
      "commits": 3
    }
  ],
  "_score": 2.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "neuroimagene",
  "_universes": [
    "xbledsoe"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-30T10:57:42.000Z",
      "distro": "noble",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "99224514d56ecd29895d4aece9244a452488c2667d692b8ab681191a2671d0c3",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.1.4",
      "date": "2026-05-30T10:57:39.000Z",
      "distro": "noble",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "8e0db72da28e6bf60c93353640761cb88dca27d73e8bd9dfd8185e5713800817",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-05-30T15:32:20.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "83fb6b086d451a8c49f263b6c8d9d6ac507ca2eafbdc58138cac20c6a6532422",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.1.4",
      "date": "2026-05-30T15:31:58.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "e5ebd73bef472b6d942b3955bec43183808f01b4388d21e79bd47d62dd477ff2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.1.4",
      "date": "2026-05-30T10:57:45.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "faf23b8f92b46e05a433f61c0131bd3e869f03b1be669ca3e06ccde9f3fe82d0",
      "status": "success",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-05-30T10:58:02.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "a9c6a958c9be21854602dba7e614ed98ca7f505bf40e2a791e948a57f9789f93",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-05-30T10:57:23.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "9425729de723ed84de4b6fc9777d8603df872c819764fae6f11fda26b90e6474",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.1.4",
      "date": "2026-05-30T10:57:25.000Z",
      "commit": "97229eb655b487a3f005a4c4bbe6e865d40bc94d",
      "fileid": "50b45cb89e44d3c5afdd171c91af28d776017df951babe32a938941651597ebb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/xbledsoe/actions/runs/26680554117"
    }
  ]
}